Anys: 2010 - actualitat
Revistes internacionals:
P Araujo-Granda, A Gras, M Ginovart, V Moulton (2020)
INDISIM-Denitrification, an individual-based model for study the denitrification process
Journal of Industrial Microbiology & Biotechnology 47, 1–20
https://doi.org/10.1007/s10295-019-02245-8
INDISIM-Denitrification, an individual-based model for study the denitrification process
Journal of Industrial Microbiology & Biotechnology 47, 1–20
https://doi.org/10.1007/s10295-019-02245-8
R Carbó, E Gordún, A Fernéndez, M Ginovart (2019)
Elaboration of a spontaneous gluten-free sourdough with a mixture of amaranth, buckwheat, and quinoa flours analyzing microbial load, acidity, and pH
Food Science and Technology International (Online)
https://doi.org/10.1177/1082013219895357
Elaboration of a spontaneous gluten-free sourdough with a mixture of amaranth, buckwheat, and quinoa flours analyzing microbial load, acidity, and pH
Food Science and Technology International (Online)
https://doi.org/10.1177/1082013219895357
LJ del Valle, M Ginovart, E Gordún, R Carbó (2018)
Histidine decarboxylase‐positive lactic acid bacteria strains and the formation of histamine in ripened cheeses
Journal of Food Processing and Preservation 42:e13708
Ginovart M, Carbó R, Blanco M and Portell X (2018)
Digital Image Analysis of Yeast Single Cells Growing in Two Different Oxygen Concentrations to Analyze the Population Growth and to Assist Individual-Based Modeling
Frontiers Microbiology 8, 2628
J Wilmoth, P Doak, A Timm, M Halsted, JD Anderson, C Prats, M Ginovart, X Portell, S Retterer, M Fuentes-Cabrera (2018)
A microfluidics and agent-based modeling framework for investigating spatial organization in bacterial colonies: the case of Pseudomonas aeruginosa and H1-Type VI Secretion Interactions
Frontiers Microbiology, 6 February 2018
Kreft JU, Plugge CM, Prats C, Leveau JHJ, Zhang W, Hellweger FL (2017)
From Genes to Ecosystems in Microbiology: Modeling Approaches and the Importance of Individuality
Frontiers Microbiology 8:2299
https://doi.org/10.3389/fmicb.2017.02299P. Jimenez, G. Marando, R. Josa, M. Ginovart, A. Ras, M. Bonmati (2017)
Comparison of absolute biochemical parameters of undisturbed soils in Mediterranean environments (NE Spain) with corresponding paràmetres relative to soil organic carbon
Catena 157, 415-423
M.T. Mas, A.M.C. Verdú, M. Ginovart, R. Josa (2017)
Seedling emergence through soil surface seals under laboratory conditions: effect of mechanical impedance and seal moisture
Biologia 72, 862-868
Y. Boukhari, M. Ginovart, A.M.C. Verdú, M.T. Mas, K Mederbal, R. Josa (2016)
Hydrological soil behavior in areas with semi-arid vegetation (Beni Chougrane Mountains, Algeria)
Biologia 71, 1131–1136
P. Araujo, A. Gras, M. Ginovart (2016)
MbT-Tool: An open-access tool based on Thermodynamic Electron Equivalents Model to obtain microbial-metabolic reactions to be used in biotechnological process
Computational and Structural Biotechnology Journal 14, 325–332
P. Araujo-Granda, A. Gras, M. Ginovart, V. Moulton (2016)
INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium
Journal of Theoretical Biology 403, 45–58
Prats C, Vilaplana C, Valls J, Marzo E, Cardona PJ and López D (2016)
Local Inflammation, Dissemination and Coalescence of Lesions Are Key for the Progression toward Active Tuberculosis: The Bubble Model.
Front. Microbiol. 7:33.
Local Inflammation, Dissemination and Coalescence of Lesions Are Key for the Progression toward Active Tuberculosis: The Bubble Model.
Front. Microbiol. 7:33.
doi:10.3389/fmicb.2016.00033
Cardona PJ, Prats C (2016)
The Small Breathing Amplitude at the Upper Lobes Favors the Attraction of Polymorphonuclear Neutrophils toMycobacterium tuberculosis Lesions and Helps to Understand the Evolution toward Active Disease in An Individual-Based Model.
Front. Microbiol. 7:354.
Cardona PJ, Prats C (2016)
The Small Breathing Amplitude at the Upper Lobes Favors the Attraction of Polymorphonuclear Neutrophils toMycobacterium tuberculosis Lesions and Helps to Understand the Evolution toward Active Disease in An Individual-Based Model.
Front. Microbiol. 7:354.
doi:10.3389/fmicb.2016.00354
Prats C, Montañola-Sales C, Gilabert-Navarro JF, Valls J, Casanovas-Garcia J, Vilaplana C, Cardona PJ, López D (2016)
Individual-Based Modeling of Tuberculosis in a User-Friendly Interface: Understanding the Epidemiological Role of Population Heterogeneity in a City.
Front. Microbiol. 6:1564.
Prats C, Montañola-Sales C, Gilabert-Navarro JF, Valls J, Casanovas-Garcia J, Vilaplana C, Cardona PJ, López D (2016)
Individual-Based Modeling of Tuberculosis in a User-Friendly Interface: Understanding the Epidemiological Role of Population Heterogeneity in a City.
Front. Microbiol. 6:1564.
Hardpan in skeletal soils: Statistical approach to determine its depth in a cherry orchard plot
Biologia 70, 1433-1438
R. Carbó, M. Ginovart A. Carta, X. Portell, L. J. del Valle (2015)
Effect of aerobic and microaerophilic culture in the growth dynamics of Saccaromyces cerevisiae and in training of quiescent and non-quiescent subpopulations
Archives of Microbiology 197, 991-999
T. Banitz, A. Gras, M. Ginovart (2015)
Individual-based modelling of soil organic matter in NetLogo: Transparent, user-friendly, and open
Environmental Modelling & Software 71, 39-45
E. Gordún, L. J. del Valle, M. Ginovart, R. Carbó (2015)
Comparison of the microbial dynamics and biochemistry of laboratory sourdoughs prepared with grape, apple and yogurt
Food Science and Technology International 21, 428-439
Vilaplana C, Prats C, Marzo E, Barril C, Vegué M, Diaz J, et al. (2014)
To Achieve an Earlier IFN-γ Response Is Not Sufficient to Control Mycobacterium tuberculosis Infection in Mice.
PLoS ONE 9(6): e100830.
To Achieve an Earlier IFN-γ Response Is Not Sufficient to Control Mycobacterium tuberculosis Infection in Mice.
PLoS ONE 9(6): e100830.
X. Portell, A. Gras, M. Ginovart (2014)
INDISIM-Saccha, an individual-based model to tackle Saccharomyces cerevisiae fermentations
Ecological Modelling 279, 12-23
N. Caceres, C. Vilaplana, C. Prats, E. Marzo, I. Llopis, J. Valls, D. López, PJ. Cardona (2013)
Evolution and role of corded cell aggregation in Mycobacterium tuberculosis cultures
Tuberculosis 93 (6), 690-698
doi:10.1016/j.tube.2013.08.003
J.U. Kreft, C.M. Plugge, V. Grimm, C. Prats et al. (2013)
Mighty small: Observing and modeling individual microbes becomes big science
PNAS 110 (45), 18027-18028
doi:10.1073/pnas.1317472110
Evolution and role of corded cell aggregation in Mycobacterium tuberculosis cultures
Tuberculosis 93 (6), 690-698
doi:10.1016/j.tube.2013.08.003
J.U. Kreft, C.M. Plugge, V. Grimm, C. Prats et al. (2013)
Mighty small: Observing and modeling individual microbes becomes big science
PNAS 110 (45), 18027-18028
doi:10.1073/pnas.1317472110
R. Josa, G. Gorchs, M. Ginovart, A. Solé-Benet (2013)
Influence of tillage on soil macropore size, shape of top layer and crop development in a sub-humid environment
Biologia 68, 1099-1103
A. Gras, J. C. Cañadas, M. Ginovart (2013)
A free accessible individual-based simulator enabling virtual experiments on soil organic matter processes in classroom
Journal of Technology and Science Education 3, 73-88
P. Gómez-Mourelo, M. Ginovart (2013)
A connection between discrete individual-based and continuous population-based models: A forest modelling case study
Artificial Intelligence Research 2, 28-46
doi:10.5430/air.v2n2p28
N. Caceres, I. Llopis, E. Marzo, C. Prats, C. Vilaplana, D. Garcia de Viedma, S. Samper, D. López, PJ Cardona (2012)
Low Dose Aerosol Fitness at the Innate Phase of Murine Infection Better Predicts Virulence amongst Clinical Strains of Mycobacterium tuberculosis
PLoS ONE 7(1):e29010
doi:10.1371/journal.pone.0029010
J. Ferrer, C. Prats, J. Vidal-Mas, D. Gargallo-Viola, A. Guglietta, A. Giró (2011)
Thermodynamic Concepts in the Study of Microbial Populations: Age Structure in Plasmodium falciparum Infected Red Blood Cells.
PLoS ONE 6(10): e26690
doi:10.1371/journal.pone.0026690
G. Marando, P. Jimenez, A. Hereter, M. Julia, M. Ginovart, M. Bonmati (2011)
Effects of thermally dried and composted sewage sludges on the fertility of residual soils from limestone quarries.
Applied soil ecology 49, 234-241.
doi:10.1016/j.apsoil.2011.05.001
A. Gras, M. Ginovart, J. Valls, P.C. Baveye (2011)
Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of microbial components
Ecological Modelling 222, 1998–2010
doi:10.1016/j.ecolmodel.2011.03.009
X. Portell, M. Ginovart, R. Carbó, A. Gras, J. Vives-Rego (2011)
Population analysis of a commercial Saccharomyces cerevisiae wine yeast in batch culture by electric particle analysis, light diffraction and flow cytometry.
FEMS Yeast Res. 11, 18-28
doi:10.1111/j.1567-1364.2010.00682.x
X. Portell, M. Ginovart, R. Carbó, J. Vives-Rego (2011)
Differences in stationary-phase cells of a commercial Saccharomyces cerevisiae wine yeast grown in aerobic and microaerophilic batch cultures assessed by electric particle analysis, light diffraction and flow cytometry.
J. Ind. Microbiol. Biotechnol. 38, 141-151
doi:10.1007/s10295-010-0839-x
M. Ginovart, C. Prats, X. Portell, M. Silbert (2011)
Analysis of the effect of inoculum characteristics on the first stages of a growing yeast population in beer fermentations by means of an Individual-based Model.
J. Ind. Microbiol. Biotechnol. 38, 153-165
doi:10.1007/s10295-010-0840-4
A. Gras, M. Ginovart, X. Portell, P.C. Baveye (2010)
Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of abiotic components.
Soil Sci. 175, 363-374
doi:10.1097/SS.0b013e3181eda507
M. Ginovart, C. Prats, X. Portell, M. Silbert (2010)
Exploring the lag phase and growth initiation of a yeast culture by means of an Individual-based Model.
Food Microbiol. 28, 810-817
doi:10.1016/j.fm.2010.05.004
C. Prats, J. Ferrer, A. Gras, M. Ginovart (2010)
Individual-based modelling and simulation of microbial processes: yeast fermentation and multi-species composting.
Mathematical and Computer Modelling of Dynamical Systems 16, 489-510
doi:10.1080/13873954.2010.481809
R. Josa, M. Ginovart, A. Solé (2010)
Effects of two tillage techniques on soil macroporosity in sub-humid environment.
International Agrophysics 24, 139-147
N. Caceres, I. Llopis, E. Marzo, C. Prats, C. Vilaplana, D. Garcia de Viedma, S. Samper, D. López, PJ Cardona (2012)
Low Dose Aerosol Fitness at the Innate Phase of Murine Infection Better Predicts Virulence amongst Clinical Strains of Mycobacterium tuberculosis
PLoS ONE 7(1):e29010
doi:10.1371/journal.pone.0029010
J. Ferrer, C. Prats, J. Vidal-Mas, D. Gargallo-Viola, A. Guglietta, A. Giró (2011)
Thermodynamic Concepts in the Study of Microbial Populations: Age Structure in Plasmodium falciparum Infected Red Blood Cells.
PLoS ONE 6(10): e26690
doi:10.1371/journal.pone.0026690
G. Marando, P. Jimenez, A. Hereter, M. Julia, M. Ginovart, M. Bonmati (2011)
Effects of thermally dried and composted sewage sludges on the fertility of residual soils from limestone quarries.
Applied soil ecology 49, 234-241.
doi:10.1016/j.apsoil.2011.05.001
A. Gras, M. Ginovart, J. Valls, P.C. Baveye (2011)
Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of microbial components
Ecological Modelling 222, 1998–2010
doi:10.1016/j.ecolmodel.2011.03.009
X. Portell, M. Ginovart, R. Carbó, A. Gras, J. Vives-Rego (2011)
Population analysis of a commercial Saccharomyces cerevisiae wine yeast in batch culture by electric particle analysis, light diffraction and flow cytometry.
FEMS Yeast Res. 11, 18-28
doi:10.1111/j.1567-1364.2010.00682.x
X. Portell, M. Ginovart, R. Carbó, J. Vives-Rego (2011)
Differences in stationary-phase cells of a commercial Saccharomyces cerevisiae wine yeast grown in aerobic and microaerophilic batch cultures assessed by electric particle analysis, light diffraction and flow cytometry.
J. Ind. Microbiol. Biotechnol. 38, 141-151
doi:10.1007/s10295-010-0839-x
M. Ginovart, C. Prats, X. Portell, M. Silbert (2011)
Analysis of the effect of inoculum characteristics on the first stages of a growing yeast population in beer fermentations by means of an Individual-based Model.
J. Ind. Microbiol. Biotechnol. 38, 153-165
doi:10.1007/s10295-010-0840-4
A. Gras, M. Ginovart, X. Portell, P.C. Baveye (2010)
Individual-based modelling of carbon and nitrogen dynamics in soils: Parameterization and sensitivity analysis of abiotic components.
Soil Sci. 175, 363-374
doi:10.1097/SS.0b013e3181eda507
M. Ginovart, C. Prats, X. Portell, M. Silbert (2010)
Exploring the lag phase and growth initiation of a yeast culture by means of an Individual-based Model.
Food Microbiol. 28, 810-817
doi:10.1016/j.fm.2010.05.004
C. Prats, J. Ferrer, A. Gras, M. Ginovart (2010)
Individual-based modelling and simulation of microbial processes: yeast fermentation and multi-species composting.
Mathematical and Computer Modelling of Dynamical Systems 16, 489-510
doi:10.1080/13873954.2010.481809
R. Josa, M. Ginovart, A. Solé (2010)
Effects of two tillage techniques on soil macroporosity in sub-humid environment.
International Agrophysics 24, 139-147
www.old.international-agrophysics.org / issues
C. Prats, J. Ferrer, D. López, A. Giró, J. Vives-Rego (2010)
On the evolution of cell size distribution during bacterial growth cycle: Experimental observations and individual-based model simulations.
Afr. J. Microbiol. Res. 4, 400-407
C. Prats, J. Ferrer, D. López, A. Giró, J. Vives-Rego (2010)
On the evolution of cell size distribution during bacterial growth cycle: Experimental observations and individual-based model simulations.
Afr. J. Microbiol. Res. 4, 400-407
Book chapters:
X. Portell, A. Gras, C. Prats, M. Ginovart (2014)
The microbial individual-based model INDISIM-YEAST ready to be used in the free access NetLogo modelling environment
In: Industrial, medical and environmental applications of microorganisms: current status and trends, Ed. A. Méndez-Vilas, Wageningen Academic Publishers, ISBN Print version: 978-90-8686-243-6, ISBN E-book: 978-90-8686-795-0 (in press)
The microbial individual-based model INDISIM-YEAST ready to be used in the free access NetLogo modelling environment
In: Industrial, medical and environmental applications of microorganisms: current status and trends, Ed. A. Méndez-Vilas, Wageningen Academic Publishers, ISBN Print version: 978-90-8686-243-6, ISBN E-book: 978-90-8686-795-0 (in press)
P. Araujo, A. Gras, M. Ginovart (2014)
An individual-based model for the study of Paracoccus denitrificans, a denitrifying bacterium
In: Industrial, medical and environmental applications of microorganisms: current status and trends, Ed. A. Méndez-Vilas, Wageningen Academic Publishers, ISBN Print version: 978-90-8686-243-6, ISBN E-book: 978-90-8686-795-0 (in press)
P. Jiménez., G. Marando, R. Josa, M. Julià, M. Ginovart, M. Bonmatí (2012)
Biochemical Characterisation of Minimally Disturbed Soils Under Mediterranean Conditions.
In: Soil Enzymology in the Recycling of Organic Wastes and Environmental Restoration, Eds. C. Trasar-Cepeda, T. Hernández, C. García, C. Rad and S. González-Carcedo. Springer-Verlag Berlin Heidelberg, pp 77-89. ISBN: 978-3-642-21162-1. DOI: 10.1007/978-3-642-21162-1_6
G. Marando, P. Jiménez, R. Josa, M. Julià, M. Ginovart, M. Bonmatí (2012)
Effects of Air-Drying and Rewetting on Extractable Organic Carbon, Microbial Biomass, Soil Respiration and β-Glucosidase and β-Galactosidase Activities of Minimally Disturbed Soils Under Mediterranean Conditions
In: Soil Enzymology in the Recycling of Organic Wastes and Environmental Restoration, Eds. C. Trasar-Cepeda, T. Hernández, C. García, C. Rad and S. González-Carcedo. Springer-Verlag Berlin Heidelberg, pp. 103-118. ISBN: 978-3-642-21162-1. DOI: 10.1007/978-3-642-21162-1_8
M. Ginovart, C. Prats (2012)
A Bacterial Individual-based Virtual Bioreactor to test Handling Protocols in a NetLogo Platform
In: Proceedings MATHMOD 2012 - 7th Vienna International Conference on Mathematical Modelling Full Papers CD Volume, Eds. I. Troch and F. Breitenecker. ARGESIM Report no 35,ARGESIM-ASIM German Simulation Society, Wien, pp. 1495-1506. ISBN 978-3-901608-35-3.
A Bacterial Individual-based Virtual Bioreactor to test Handling Protocols in a NetLogo Platform
In: Proceedings MATHMOD 2012 - 7th Vienna International Conference on Mathematical Modelling Full Papers CD Volume, Eds. I. Troch and F. Breitenecker. ARGESIM Report no 35,ARGESIM-ASIM German Simulation Society, Wien, pp. 1495-1506. ISBN 978-3-901608-35-3.
A. Gras, J. Comas, M. Ginovart (2012)
An individual-based model for dealing with organic amendments and mineral nitrogen soil fertilizations
In: Microbes in Applied Research: Current Advances and Challenges, Ed. A. Mendez-Vilas. World Scientific Publishing Co. Pte. Ltd. pp. 13-17. ISBN: 978-981-4405-03-4.
An individual-based model for dealing with organic amendments and mineral nitrogen soil fertilizations
In: Microbes in Applied Research: Current Advances and Challenges, Ed. A. Mendez-Vilas. World Scientific Publishing Co. Pte. Ltd. pp. 13-17. ISBN: 978-981-4405-03-4.
M. Ginovart, C. Prats, X. Portell (2011)
Sensitivity analysis and individual-based models in the study of yeast populations.
In: Proceedings 25th European Conference on Modelling and Simulation ECMS 2011. Eds. T. Burczynski, J. Kolodziej, A. Byrski, M. Carvalho. Digitaldruck Pirrot GmbH. Dudweiler (Gremany), pp. 41-47. ISBN: 978-0-9564944-2-9, CD ISBN: 978-0-9564944-3-6.
Sensitivity analysis and individual-based models in the study of yeast populations.
In: Proceedings 25th European Conference on Modelling and Simulation ECMS 2011. Eds. T. Burczynski, J. Kolodziej, A. Byrski, M. Carvalho. Digitaldruck Pirrot GmbH. Dudweiler (Gremany), pp. 41-47. ISBN: 978-0-9564944-2-9, CD ISBN: 978-0-9564944-3-6.
A. Gras, J. C. Cañadas, M. Ginovart (2010)
INDISIM-SOM: an individual-based simulator on a website for experimenting and investigating diverse dynamics of Carbon and Nitrogen in mineral soils
In: Microorganisms in industry and environment. From Scientific and Industrial Research to Consumer Products. Ed. A. Mendez-Vilas. World Scientific Publishing Co., pp. 167-171. ISBN: 978-981-4322-10-2.
Other publications:
M Ginovart, A Tutusaus, MT Mas (2019)
Modelización basada en agentes: canibalismo microbiano
Modelling in Science Education and Learning 12 (2), 5-46
https://doi.org/10.4995/msel.2019.10975
Modelización basada en agentes: canibalismo microbiano
Modelling in Science Education and Learning 12 (2), 5-46
https://doi.org/10.4995/msel.2019.10975
M Ginovart, M Font (2019)
Massa petits per poder ser modelitzats?
Treballs de la Societat Catalana de Biologia 68, 50-53
https://publicacions.iec.cat/repository/pdf/00000277/00000091.pdf
Massa petits per poder ser modelitzats?
Treballs de la Societat Catalana de Biologia 68, 50-53
https://publicacions.iec.cat/repository/pdf/00000277/00000091.pdf
Viteri Á., Blanco M., Carbó R., Ginovart M. (2017)
Modelización del crecimiento de una población microbiana en medio líquido y su implicación en el estudio de la morfología celular a través del análisis digital de imágenes
Modelling in Science Education and Learning 10 (2), 153-191
Font M., Ginovart M. (2016)
Modelización de crecimientos microbianos en medios heterogéneos y de movilidad reducida
Modelling in Science Education and Learning 9 (2), 81-120
M. Ginovart (2015)
¿Qué pueden ofrecer los modelos basados en agentes vivos en el contexto docente?
Modelling in Science Education and Learning 8 (2), 5-26
M. Ginovart (2014)
Discovering the Power of Individual-Based Modelling in Teaching and Learning: The Study of a Predator–Prey System
Journal of Science Education and Technology 23, 496-513
M. Ginovart, X. Portell, P. Ferrer-Closas, M. Blanco (2012)
Modelos basados en el individuo: una metodologia alternativa y atractiva para el estudio de biosistemas
Enseñanza de las ciencias 30, 93-108
https://doi.org/10.5565/rev/ec/v30n2.572
M. Ginovart, X. Portell, P. Ferrer-Closas, M. Blanco (2011)
Modelos basados en el individuo y la plataforma NetLogo
Union-Revista Iberoamericana de Educación Matematica 27, 131-150
M. Ginovart, X. Portell, P. Ferrer-Closas, M. Blanco (2011)
Modelos basados en el individuo y la plataforma NetLogo
Union-Revista Iberoamericana de Educación Matematica 27, 131-150
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